About Simon
Bonjour, je suis doctorant en bioinformatique travaillant sur la charactérisation de types cellulaires chez l'humain. J'effectue des analyses transcriptomiques principalement (scRNAseq et RNAseq).
En dehors de mon activité professionnelle, je créé de petits jeux à l 'aide de Godot 4 (2D) je débute encore et j'ai créé un site de location de jeux de société, où tout le côté back-end est réalisé en Django et le front-end est en cours de réalisation (CSS + React).
French
Native or bilingual
Remote only
Primarily works remotely
Experience
- CRTI UMR 1064 NantesPhD student in Bioinformatics : "Transcriptomic modeling of human peri-implantation development"October 2021 - Today (4 years and 8 months)Nantes, FranceTranscriptomic modeling of human peri-implantation development :- FASTQ alignement with Kallisto.- Quality Control.- Batch-effect correction using Mutual Nearest Neighbors.- UMAP visualisations.- Leiden clustering on cells.- Pseudotime with Monocle3 and Slingshot.- Plot heatmap using ComplexHeatmap R package.- Seek markers of clusters with WGCNA, SCENIC and TradeSeq.- Modules preservation with WGCNA and GWENA.- Web application to show previous results interactively using DASH.
- CHU de Nantes : Centre de Recherche en Transplantation et Immunologie (CRTI)Bioinformatic internship Master 2March 2021 - October 2021 (7 months)Nantes, FranceTranscriptomic modeling of human peri-implantation development :- FASTQ alignement with Kallisto.- Quality Control.- Batch-effect correction using Mutual Nearest Neighbors.- UMAP visualisations.- Leiden clustering on cells.- Pseudotime with Monocle3.- Plot heatmap using ComplexHeatmap R package.- Seek markers of clusters with WGCNA.
- Københavns Universitet - University of CopenhagenAlzheimer's MRI image biohackathonNovember 2020 - November 2020Participation to Alzheimer's MRI image" biohackathon by creating Convolutional Neural Network to classify MRI with or without Alzheimer from synthetic or real data.
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Education
- Master's degree, Bioinformatics and BiostatisticUniversité de Nantes2021Master's degree, Bioinformatics and Biostatistic
- Master's degree, Integrative biology and global changeUniversité d'Orléans2019Master's degree, Integrative biology and global change