Description

With 10+ years of experience building automated pipelines for large-scale bioinformatics and scientific computing, I have a deep understanding of the real-world constraints research and data teams face in managing their infrastructure.

I help teams design and operate reproducible, secure, and scalable cloud and HPC environments, combining modern infrastructure tools (Terraform, Ansible, Docker, AWS) with the scientific computing stack (Slurm, Nextflow, Conda, Singularity).

Industry field of expertise

Languages

French
Native or bilingual
English
Fluent

Workplace preferences

Remote only

Primarily works remotely

Freelance
Freelance Bioinformatician
RESEARCH
November 2017 - January 2026 (8 years and 2 months)
Angers, France
Delivered consulting, pipeline development, and data analysis projects in bioinformatics, with a focus on high-throughput DNA and RNA sequencing data for biotech, clinical, and academic clients.

Selected engagements included:

• Built a Bash/Nextflow pipeline on an HPC cluster to automate the integration and analysis of public sequencing datasets to investigate immunotherapy response for OSE Immunotherapeutics
• Provided consulting on the development of a SaaS workflow for personalised medicine in oncology for Omicure, in collaboration with SOPHiA GENETICS
• Set up and configured a Conda environment on an HPC cluster to support cell population inference from tumour sequencing data for the Vall d’Hebron Institute of Oncology
• Developed a Bash pipeline on AWS for the automated analysis of metagenomic sequencing data for Royal Canin
• Delivered bioinformatics training and introduced participants to the use of an HPC cluster for the French Institute of Bioinformatics
Bash Amazon Web Services HPC Linux Nextflow
INRAE Versailles-Grignon,
Bioinformatician
RESEARCH
April 2016 - October 2017 (1 year and 6 months)
Thiverval-Grignon, France
• Development of a workflow for fungal genome sequencing data analysis (Bash)
• Population genomics data analysis
• Genome assembly from long-read sequencing data (PacBio)
Linux Administration système Génétique Bash Analyse de données
CLCC GUSTAVE ROUSSY
Bioinformatician
RESEARCH
March 2015 - March 2016 (1 year)
94800 Villejuif, France
• Development of a transcript fusion detection workflow from RNA sequencing data (Python/Bash)
• Analysis of de séquençage ADN ciblé et détection de variants génomiques
Bash Analyse de données Génétique HPC Python